Highly expressed genes in marine sponge Suberites domuncula prefer C- and G-ending codons
Summary: Sponges are the simplest extant phylum of Metazoa; they are closest to the common ancestor of all multicellular animals. A total of 223 coding sequences from Suberites domuncula (Demospongiae) represent the dataset for the codon usage analysis. A total of 46038 codons had an average guanine...
| Permalink: | http://skupnikatalog.nsk.hr/Record/nsk.NSK01000736065/Details |
|---|---|
| Matična publikacija: |
Food technology and biotechnology 47 (2009), 3 ; str. 269-274 |
| Glavni autor: | Perina, Drago (-) |
| Ostali autori: | Harcet, Matija (-), Mikoč, Andreja, Vlahoviček, Kristian, Mueller, Werner E. G., Ćetković, Helena |
| Vrsta građe: | Članak |
| Jezik: | eng |
| Predmet: | |
| Online pristup: |
Food Technology and Biotechnology |
| LEADER | 02397caa a2200337 ir4500 | ||
|---|---|---|---|
| 001 | NSK01000736065 | ||
| 003 | HR-ZaNSK | ||
| 005 | 20210302162942.0 | ||
| 007 | ta | ||
| 008 | 100507s2009 ci ||| ||eng | ||
| 035 | |9 (HR-ZaNSK)738689 | ||
| 035 | |a (HR-ZaNSK)000736065 | ||
| 040 | |a HR-ZaNSK |b hrv |c HR-ZaNSK |e ppiak | ||
| 042 | |a croatica | ||
| 080 | |a 57 |2 MRF 1998. | ||
| 100 | 1 | |a Perina, Drago | |
| 245 | 1 | 0 | |a Highly expressed genes in marine sponge Suberites domuncula prefer C- and G-ending codons / |c Drago Perina, Matija Harcet, Andreja Mikoč, Kristian Vlahoviček, Werner E. G. Mueller, Helena Ćetković. |
| 300 | |b Ilustr. | ||
| 500 | |a Congress of Croatian society of biochemistry and molecular biology, Osijek, Croatia, 17-20 September 2008 | ||
| 504 | |a Bibliografija: 34 jed. | ||
| 520 | 8 | |a Summary: Sponges are the simplest extant phylum of Metazoa; they are closest to the common ancestor of all multicellular animals. A total of 223 coding sequences from Suberites domuncula (Demospongiae) represent the dataset for the codon usage analysis. A total of 46038 codons had an average guanine and cytosine (G+C) content of 45.8 % and an average content of guanine and cytosine at the synonymous third position of codons (GC3S) of 43.4 %. In this sample of genes considerable variations in synonymous codon usage were found. The G+C content of the coding sequences varied from 34 to 56.1 % and GC3S from 19 to 58.7 %. Correspondence analysis revealed that highly expressed genes preferentially use a limited subset of codons (preferred codons). A total of 15 preferred codons were found and they all, with one exception, end with C or G. The preferential use of C- or G-ending codons in highly expressed genes was possibly developed in a common ancestor of sponges and other Metazoa and it has remained conserved throughout the sponge evolution | |
| 653 | 0 | |a Morska spužva |a Suberites domuncula |a Ekspresija gena |a Genetski kod |a Nukleinske baze |a Gvanin |a Citozin | |
| 700 | 1 | |a Harcet, Matija | |
| 700 | 1 | |a Mikoč, Andreja | |
| 700 | 1 | |a Vlahoviček, Kristian | |
| 700 | 1 | |a Mueller, Werner E. G. | |
| 700 | 1 | |a Ćetković, Helena | |
| 773 | 0 | |t Food technology and biotechnology |x 1330-9862 |g 47 (2009), 3 ; str. 269-274 |w nsk.(HR-ZaNSK)000174173 | |
| 981 | |b B03/09 | ||
| 998 | |a Luko100507 |c vol2o121012 |b mili2103 | ||
| 856 | 4 | 2 | |u http://hrcak.srce.hr/ftb |y Food Technology and Biotechnology |